miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29985	+	234870	76	19	-22.4			5' arm      3' arm
30200	-	193618	90	19	-20.6	YP_081586		5' arm      3' arm
30109	-	90539	90	19	-23.9	YP_081516		5' arm      3' arm
2047	-	222848	89	19	-27.1	NP_040115		5' arm      3' arm
30236	-	221159	82	19	-25.2	YP_081609		5' arm      3' arm
2030	-	211900	88	19	-26.7	NP_783806		5' arm      3' arm
1578	+	42587	89	19	-23.5	NP_039966		5' arm      3' arm
29791	+	86948	88	19	-22.5	YP_081515		5' arm      3' arm
1869	-	59170	89	19	-21.4	NP_039979		5' arm      3' arm
1950	-	136114	88	19	-21.9	NP_040028		5' arm      3' arm
1948	-	133248	89	19	-25.7	NP_040023		5' arm      3' arm
30179	-	168228	89	19	-23.8			5' arm      3' arm
1935	-	119702	90	19	-20.2	NP_040017		5' arm      3' arm
1842	-	39580	87	19	-21.2	NP_783780		5' arm      3' arm
1843	-	39994	89	19	-24.2	NP_039966		5' arm      3' arm
29737	+	36632	88	19	-25	YP_081488		5' arm      3' arm
1821	-	29230	86	19	-30	NP_783778		5' arm      3' arm
1896	-	72379	90	19	-24.2	NP_039983		5' arm      3' arm
1859	-	51387	90	19	-21.3	NP_039972		5' arm      3' arm
30105	-	87930	90	19	-27	YP_081516		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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