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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15841 | + | 138437 | 89 | 19.5 | -27.4 | YP_214096 | 5' arm 3' arm | ||
| 15698 | + | 41658 | 90 | 19.5 | -23.7 | 5' arm 3' arm | |||
| 15704 | + | 47340 | 89 | 19.5 | -28.9 | YP_214048 | 5' arm 3' arm | ||
| 16086 | - | 106689 | 90 | 19.5 | -20.2 | YP_214078 | 5' arm 3' arm | ||
| 15688 | + | 30371 | 86 | 19.5 | -27.2 | YP_214035 | 5' arm 3' arm | ||
| 15686 | + | 29471 | 89 | 19.5 | -23.5 | YP_214035 | 5' arm 3' arm | ||
| 16129 | - | 138501 | 90 | 19.5 | -28 | YP_214096 | 5' arm 3' arm | ||
| 15733 | + | 62760 | 90 | 19.5 | -22.7 | YP_214058 | 5' arm 3' arm | ||
| 15677 | + | 24785 | 87 | 19.5 | -26.2 | YP_214031 | 5' arm 3' arm | ||
| 16108 | - | 120514 | 90 | 19.5 | -19.8 | YP_214086 | 5' arm 3' arm | ||
| 15804 | + | 116415 | 88 | 19.5 | -21.3 | YP_214084 | 5' arm 3' arm | ||
| 15736 | + | 66037 | 90 | 19.5 | -22.8 | 5' arm 3' arm | |||
| 15921 | + | 222600 | 90 | 19.5 | -22.2 | YP_214164 | 5' arm 3' arm | ||
| 16083 | - | 103467 | 90 | 19.5 | -28.8 | YP_214075 | 5' arm 3' arm | ||
| 16078 | - | 99733 | 86 | 19.5 | -21.8 | YP_214073 | 5' arm 3' arm | ||
| 15683 | + | 28489 | 90 | 19.5 | -19.5 | YP_214034 | 5' arm 3' arm | ||
| 16160 | - | 159919 | 90 | 19.5 | -28.7 | 5' arm 3' arm | |||
| 15685 | + | 29360 | 89 | 19.5 | -20.4 | YP_214035 | 5' arm 3' arm | ||
| 15908 | + | 201828 | 90 | 19.5 | -25.7 | YP_214143 | 5' arm 3' arm | ||
| 15699 | + | 41873 | 90 | 19.5 | -24.6 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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