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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 11079 | - | 109960 | 89 | 19.5 | -20.6 | NP_116415 | 5' arm 3' arm | ||
| 11113 | - | 155308 | 86 | 19.5 | -23.7 | NP_116447 | 5' arm 3' arm | ||
| 10772 | + | 100058 | 90 | 19.5 | -22.14 | NP_116410 | 5' arm 3' arm | ||
| 11111 | - | 152153 | 85 | 19.5 | -21.8 | NP_116445 | 5' arm 3' arm | ||
| 10913 | + | 193165 | 90 | 19.5 | -22.6 | 5' arm 3' arm | |||
| 10994 | - | 67122 | 89 | 19.5 | -19.4 | NP_116392 | 5' arm 3' arm | ||
| 11040 | - | 93014 | 90 | 19.5 | -20.4 | NP_116408 | 5' arm 3' arm | ||
| 10764 | + | 93739 | 89 | 19.5 | -26 | NP_116408 | 5' arm 3' arm | ||
| 11043 | - | 94268 | 89 | 19.5 | -27 | NP_116408 | 5' arm 3' arm | ||
| 11048 | - | 95895 | 87 | 19.5 | -26.4 | NP_116408 | 5' arm 3' arm | ||
| 11076 | - | 108155 | 89 | 19.5 | -25.2 | 5' arm 3' arm | |||
| 11077 | - | 108415 | 90 | 19.5 | -29.3 | 5' arm 3' arm | |||
| 11039 | - | 92802 | 90 | 19.5 | -26.1 | NP_116408 | 5' arm 3' arm | ||
| 11121 | - | 163315 | 88 | 19.5 | -23.2 | NP_116454 | 5' arm 3' arm | ||
| 11080 | - | 110166 | 89 | 19.5 | -27.7 | 3' arm | |||
| 11117 | - | 160382 | 90 | 19.5 | -30.7 | NP_116452 | 5' arm 3' arm | ||
| 10758 | + | 86006 | 88 | 19.5 | -28.9 | 5' arm 3' arm | |||
| 11132 | - | 178589 | 89 | 20 | -23.4 | NP_116468 | 5' arm 3' arm | ||
| 10813 | + | 129769 | 90 | 20 | -22.4 | NP_116431 | 5' arm 3' arm | ||
| 10816 | + | 130660 | 85 | 20 | -24.5 | NP_116432 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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