miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26490 + 16704 84 21 -22.8 NP_958682 5' arm      3' arm
26489 + 16486 90 21 -21.7 NP_958682 5' arm      3' arm
26480 + 13988 82 21 -20.02 NP_958680 5' arm      3' arm
26557 - 15828 90 21 -23.4 NP_958682 5' arm      3' arm
26479 + 13862 87 21 -21.3 NP_958680 5' arm      3' arm
26591 - 33678 87 21 -19.5 NP_958705 5' arm      3' arm
26486 + 16105 90 21.5 -23.9 NP_958682 5' arm      3' arm
26566 - 21439 89 21.5 -25.1 NP_958690 5' arm      3' arm
26450 + 4118 90 21.5 -22 NP_958677 5' arm      3' arm
26608 - 37416 80 21.5 -34.1 NP_958711 5' arm      3' arm
26577 - 28358 87 21.5 -26.2 NP_958698 5' arm      3' arm
26511 + 22667 89 21.5 -27.2 NP_958690 5' arm      3' arm
26457 + 5566 88 21.5 -22.1 NP_958678 5' arm      3' arm
26604 - 36731 90 21.5 -20.7 NP_958711 5' arm      3' arm
26458 + 5692 90 21.5 -20.3 NP_958678 5' arm      3' arm
26521 + 27940 86 21.5 -23.6 NP_958698 5' arm      3' arm
26500 + 19800 88 21.5 -31.6 NP_958687 5' arm      3' arm
26513 + 23940 90 21.5 -25.3 NP_958693 5' arm      3' arm
26492 + 17064 90 21.5 -22 NP_958682 5' arm      3' arm
26527 + 33062 87 21.5 -26.6 NP_958705 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.