miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17179 - 28875 85 20.5 -21 NP_705665 5' arm      3' arm
17096 + 44807 88 20.5 -21.43 NP_705685 5' arm      3' arm
17126 - 8481 88 20.5 -26.9 NP_705639 5' arm      3' arm
17112 - 2843 88 20.5 -27.8 NP_705631 5' arm      3' arm
17141 - 13080 88 20.5 -26.6 NP_705643 5' arm      3' arm
17035 + 16643 89 20.5 -20.9 NP_705646 5' arm      3' arm
17184 - 30964 90 20.5 -20.8 NP_705668 5' arm      3' arm
17168 - 24791 88 20.5 -19.7 NP_705659 5' arm      3' arm
17195 - 38246 90 20.5 -21.6 NP_705675 5' arm      3' arm
17030 + 13545 84 20.5 -23.1 NP_705643 5' arm      3' arm
17185 - 31769 90 20.5 -21.4 NP_705669 5' arm      3' arm
17115 - 4366 89 20.5 -25.6 YP_022740 5' arm      3' arm
17158 - 21006 86 20.5 -25.3 NP_705653 5' arm      3' arm
17172 - 26593 84 20.5 -21.1 NP_705662 5' arm      3' arm
17205 - 41929 87 20.5 -33 NP_705681 5' arm      3' arm
17001 + 2883 88 21 -20.4 NP_705631 5' arm      3' arm
17144 - 13690 90 21 -27.7 5' arm      3' arm
17081 + 37307 88 21 -23.2 NP_705675 5' arm      3' arm
17139 - 12732 89 21 -21.7 NP_705643 5' arm      3' arm
17043 + 21168 90 21 -28.3 NP_705653 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.