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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23639 | + | 81542 | 87 | 20 | -29.1 | NP_954931 | 5' arm 3' arm | ||
| 23832 | - | 115352 | 90 | 20 | -21.5 | NP_954963 | 5' arm 3' arm | ||
| 23823 | - | 101068 | 90 | 20 | -32.5 | NP_954949 | 5' arm 3' arm | ||
| 23836 | - | 117693 | 87 | 20 | -21.8 | NP_954956 | 5' arm 3' arm | ||
| 23846 | - | 123579 | 89 | 20 | -27 | NP_954960 | 5' arm 3' arm | ||
| 23842 | - | 120215 | 89 | 20 | -25.8 | NP_954958 | 5' arm 3' arm | ||
| 23776 | - | 68426 | 86 | 20 | -23.6 | 5' arm 3' arm | |||
| 23801 | - | 85839 | 90 | 20 | -22.3 | NP_954936 | 5' arm 3' arm | ||
| 23696 | + | 127487 | 90 | 20.5 | -33.3 | NP_954963 | 5' arm 3' arm | ||
| 23845 | - | 121554 | 88 | 20.5 | -26.1 | NP_954959 | 5' arm 3' arm | ||
| 23614 | + | 56025 | 90 | 20.5 | -26.6 | NP_954919 | 5' arm 3' arm | ||
| 23617 | + | 57966 | 90 | 20.5 | -21.4 | NP_954920 | 5' arm 3' arm | ||
| 23699 | + | 129086 | 88 | 20.5 | -27.8 | 5' arm 3' arm | |||
| 23618 | + | 58089 | 89 | 20.5 | -23.6 | NP_954920 | 5' arm 3' arm | ||
| 23604 | + | 50521 | 87 | 20.5 | -21.2 | NP_954918 | 5' arm 3' arm | ||
| 23659 | + | 96261 | 88 | 20.5 | -33.6 | NP_954943 | 5' arm 3' arm | ||
| 23763 | - | 57153 | 90 | 20.5 | -28.8 | NP_954920 | 5' arm 3' arm | ||
| 23802 | - | 85934 | 87 | 20.5 | -26.5 | NP_954937 | 5' arm 3' arm | ||
| 23841 | - | 120090 | 88 | 20.5 | -20.8 | NP_954958 | 5' arm 3' arm | ||
| 23663 | + | 99461 | 87 | 20.5 | -23.3 | NP_954946 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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