miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2759	-	39885	90	21	-23.9	YP_053069		5' arm      3' arm
2782	-	85104	89	21	-20.4	YP_053091		5' arm      3' arm
2737	-	14011	88	21.5	-24	YP_053057		5' arm      3' arm
2682	+	87420	87	21.5	-19.7	YP_053092		5' arm      3' arm
2809	-	122919	89	21.5	-20	YP_053122		5' arm      3' arm
2757	-	39026	88	21.5	-24.8	YP_053069		5' arm      3' arm
2744	-	20619	89	21.5	-23.5	YP_053060		5' arm      3' arm
2718	+	140241	89	21.5	-20	YP_053122		5' arm      3' arm
2765	-	47611	90	21.5	-22.1	YP_053071		5' arm      3' arm
2649	+	41549	89	21.5	-20.3	YP_053069		5' arm      3' arm
2701	+	115143	90	21.5	-30.9	YP_053108		5' arm      3' arm
2697	+	113000	89	21.5	-30.7			5' arm      3' arm
2830	-	150160	89	21.5	-30.7			5' arm      3' arm
2826	-	148017	90	21.5	-30.9	YP_053124		5' arm      3' arm
2694	+	106201	87	21.5	-25.5	YP_053103		5' arm      3' arm
2746	-	27412	89	21.5	-28.1	YP_053064		5' arm      3' arm
2785	-	88439	90	21.5	-20.9	YP_053090		5' arm      3' arm
2752	-	34411	90	21.5	-28.2	YP_053068		5' arm      3' arm
2788	-	91801	89	21.5	-22.2	YP_053046		5' arm      3' arm
2632	+	6439	90	21.5	-22.1	YP_053051		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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