miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
30190	-	187733	87	19	-24	YP_081578		5' arm      3' arm
2055	-	229380	89	19	-19.5	NP_040085		5' arm      3' arm
29986	+	235181	90	19	-22.8			5' arm      3' arm
29785	+	79668	90	19	-25.1	YP_081513		5' arm      3' arm
29970	+	218580	90	19	-19.5	YP_081608		5' arm      3' arm
30132	-	123167	87	19	-29	YP_081532		5' arm      3' arm
1875	-	62718	89	19	-22.8	NP_783786		5' arm      3' arm
1897	-	72757	88	19	-26.1	NP_039983		5' arm      3' arm
30032	-	39926	87	19	-21.2	YP_081490		5' arm      3' arm
1578	+	42587	89	19	-23.5	NP_039966		5' arm      3' arm
30139	-	133624	89	19	-25.7	YP_081536		5' arm      3' arm
1688	+	127031	81	19.5	-21.8	NP_040021		5' arm      3' arm
1954	-	143592	89	19.5	-25			5' arm      3' arm
1979	-	159017	88	19.5	-24.5			5' arm      3' arm
1955	-	144705	90	19.5	-31	NP_040033		5' arm      3' arm
1691	+	129408	88	19.5	-21.4	NP_040022		5' arm      3' arm
1758	+	173947	90	19.5	-28.9	NP_040061		5' arm      3' arm
1988	-	164496	89	19.5	-26	NP_040051		5' arm      3' arm
29738	+	36840	89	19.5	-21.6	YP_081488		5' arm      3' arm
1989	-	165116	89	19.5	-20.9	NP_783793		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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