miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
8838	+	29444	87	22	-20	NP_061536		5' arm      3' arm
8789	+	799	90	22	-21.4	NP_061498		5' arm      3' arm
8853	+	37366	88	22	-26.4	NP_061549		5' arm      3' arm
8796	+	3599	89	22.5	-33.9	NP_061501		5' arm      3' arm
8887	-	5278	90	22.5	-23.8	NP_061502		5' arm      3' arm
8858	+	40263	90	22.5	-21	NP_061557		5' arm      3' arm
8824	+	17718	90	22.5	-22.3	NP_061522		5' arm      3' arm
8904	-	18576	90	22.5	-24.4	NP_061522		5' arm      3' arm
8849	+	34792	89	22.5	-22.6	NP_061546		5' arm      3' arm
8923	-	43979	90	22.5	-21.6			5' arm
8934	-	53533	84	22.5	-27.9			5' arm      3' arm
8897	-	14101	90	23	-22.9	NP_061517		5' arm      3' arm
8847	+	33367	89	23	-29.9	NP_061540		5' arm      3' arm
8913	-	34922	90	23	-29.2	NP_061546		5' arm      3' arm
8829	+	24931	90	23	-22.8	NP_061526		5' arm      3' arm
8813	+	14417	90	23.5	-24.7	NP_061518		5' arm      3' arm
8812	+	12116	87	23.5	-21.2	NP_061515		5' arm      3' arm
8888	-	7168	90	23.5	-29.9			5' arm      3' arm
8798	+	6004	87	23.5	-23	NP_061504		5' arm      3' arm
8874	+	54295	87	23.5	-24.1	NP_061583		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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