miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
9650	+	129415	90	22.5	-28.3	NP_066899		5' arm      3' arm
9624	+	80948	90	22.5	-25	NP_066868		5' arm      3' arm
9652	+	130152	89	22.5	-29.9			5' arm      3' arm
9645	+	128545	89	23	-32.1	NP_066821		5' arm      3' arm
9656	+	130898	88	23	-21.5			5' arm      3' arm
9745	-	122979	88	23	-29.7	NP_066893		5' arm      3' arm
9592	+	5495	90	23	-29.7			5' arm      3' arm
9742	-	116834	90	23	-30.6	NP_066888		5' arm      3' arm
9756	-	130443	89	23	-23.7	NP_066819		5' arm      3' arm
9588	+	3140	89	23	-23.7	NP_066819		5' arm      3' arm
9595	+	8500	90	23	-21.1	NP_066823		5' arm      3' arm
9776	-	158580	89	23	-25.5	NP_066903		5' arm      3' arm
9735	-	92715	89	23	-20.6	NP_066872		5' arm      3' arm
9664	+	138891	89	23	-25.5	NP_066903		5' arm      3' arm
9679	+	160883	88	23	-35.4	NP_066903		5' arm      3' arm
9761	-	136588	88	23	-35.4	NP_066916		5' arm      3' arm
9697	-	5038	89	23	-32.1	NP_066898		5' arm      3' arm
9732	-	76384	89	23	-21.6	NP_066868		5' arm      3' arm
9752	-	128088	90	23	-29.7			5' arm      3' arm
9599	+	10604	88	23	-29.7	NP_066826		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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