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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28851 | + | 116905 | 87 | 20 | -24.7 | YP_067994 | 5' arm 3' arm | ||
| 28815 | + | 74226 | 89 | 20 | -20 | YP_067965 | 5' arm 3' arm | ||
| 28994 | - | 29624 | 90 | 20 | -27 | 5' arm 3' arm | |||
| 29108 | - | 133188 | 81 | 20 | -30 | 5' arm 3' arm | |||
| 28842 | + | 110186 | 87 | 20 | -26.4 | YP_067990 | 5' arm 3' arm | ||
| 28999 | - | 31484 | 90 | 20 | -24.2 | YP_067943 | 5' arm 3' arm | ||
| 28838 | + | 105080 | 88 | 20 | -28.1 | YP_067985 | 5' arm 3' arm | ||
| 28774 | + | 46171 | 88 | 20 | -29.8 | YP_067950 | 5' arm 3' arm | ||
| 28782 | + | 48832 | 90 | 20 | -20.6 | YP_067950 | 5' arm 3' arm | ||
| 28775 | + | 46606 | 87 | 20 | -26.5 | YP_067950 | 5' arm 3' arm | ||
| 28840 | + | 106440 | 90 | 20.5 | -21.5 | YP_067986 | 5' arm 3' arm | ||
| 29127 | - | 148701 | 87 | 20.5 | -23.9 | YP_068006 | 5' arm 3' arm | ||
| 28921 | + | 160290 | 88 | 20.5 | -22 | YP_068012 | 5' arm 3' arm | ||
| 29083 | - | 111639 | 88 | 20.5 | -29.7 | YP_067987 | 5' arm 3' arm | ||
| 29003 | - | 33564 | 77 | 20.5 | -26.1 | 5' arm 3' arm | |||
| 29081 | - | 109738 | 88 | 20.5 | -23.4 | YP_067989 | 5' arm 3' arm | ||
| 29040 | - | 81873 | 90 | 20.5 | -22.1 | YP_067967 | 5' arm 3' arm | ||
| 29042 | - | 82189 | 84 | 20.5 | -30.5 | YP_067967 | 5' arm 3' arm | ||
| 28783 | + | 49675 | 71 | 20.5 | -20.9 | YP_067950 | 5' arm 3' arm | ||
| 28826 | + | 93520 | 90 | 20.5 | -25 | YP_067977 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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