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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15805 | + | 117396 | 90 | 23.5 | -21.5 | YP_214084 | 5' arm 3' arm | ||
| 16189 | - | 188865 | 88 | 23.5 | -24.3 | 5' arm 3' arm | |||
| 15954 | - | 26147 | 89 | 23.5 | -23.5 | YP_214034 | 5' arm 3' arm | ||
| 15662 | + | 1787 | 88 | 23.5 | -21.7 | YP_214010 | 5' arm 3' arm | ||
| 16014 | - | 63186 | 86 | 23.5 | -21.4 | YP_214059 | 5' arm 3' arm | ||
| 15705 | + | 47670 | 90 | 23.5 | -24.2 | 5' arm 3' arm | |||
| 15778 | + | 94477 | 86 | 23.5 | -32.1 | 5' arm 3' arm | |||
| 16203 | - | 197443 | 85 | 23.5 | -23 | YP_214140 | 5' arm 3' arm | ||
| 15957 | - | 27053 | 89 | 23.5 | -25.6 | YP_214034 | 5' arm 3' arm | ||
| 15839 | + | 136946 | 89 | 23.5 | -28.1 | YP_214094 | 5' arm 3' arm | ||
| 15970 | - | 33790 | 86 | 23.5 | -29.1 | YP_214040 | 5' arm 3' arm | ||
| 15780 | + | 96194 | 90 | 23 | -20.5 | YP_214071 | 5' arm 3' arm | ||
| 15870 | + | 165662 | 88 | 23 | -20.1 | YP_214109 | 5' arm 3' arm | ||
| 15862 | + | 154245 | 90 | 23 | -28.2 | YP_214106 | 5' arm 3' arm | ||
| 15867 | + | 163570 | 89 | 23 | -25 | 5' arm 3' arm | |||
| 15711 | + | 52666 | 89 | 23 | -26.8 | YP_214051 | 5' arm 3' arm | ||
| 15758 | + | 79992 | 89 | 23 | -23.3 | 5' arm 3' arm | |||
| 16162 | - | 162297 | 89 | 23 | -22.1 | YP_214107 | 5' arm 3' arm | ||
| 15927 | + | 225303 | 89 | 23 | -20.7 | YP_214166 | 5' arm 3' arm | ||
| 15856 | + | 149181 | 90 | 23 | -29.6 | YP_214104 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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