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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10942 | - | 38381 | 90 | 23.5 | -25 | NP_116367 | 5' arm 3' arm | ||
| 10914 | + | 193466 | 86 | 23.5 | -21.9 | NP_116483 | 5' arm 3' arm | ||
| 10757 | + | 85847 | 87 | 23.5 | -21.9 | 5' arm 3' arm | |||
| 10998 | - | 71751 | 90 | 23.5 | -28 | NP_116398 | 5' arm 3' arm | ||
| 10983 | - | 62494 | 86 | 23.5 | -26.9 | 5' arm 3' arm | |||
| 10768 | + | 97220 | 81 | 23.5 | -29 | NP_116409 | 5' arm 3' arm | ||
| 11003 | - | 73424 | 87 | 23.5 | -23.3 | NP_116398 | 5' arm 3' arm | ||
| 10864 | + | 159919 | 87 | 23.5 | -20.9 | 5' arm 3' arm | |||
| 10698 | + | 222 | 90 | 23.5 | -21.9 | NP_116330 | 5' arm 3' arm | ||
| 11041 | - | 93420 | 88 | 23.5 | -20.9 | NP_116408 | 5' arm 3' arm | ||
| 10827 | + | 135274 | 88 | 23.5 | -23.7 | NP_116435 | 5' arm 3' arm | ||
| 10947 | - | 41873 | 90 | 23.5 | -23.6 | NP_116369 | 5' arm 3' arm | ||
| 10867 | + | 162264 | 89 | 23.5 | -31.8 | NP_116453 | 5' arm 3' arm | ||
| 10848 | + | 147870 | 86 | 23 | -24.2 | NP_116443 | 5' arm 3' arm | ||
| 10885 | + | 173449 | 90 | 23 | -22.5 | 5' arm 3' arm | |||
| 10782 | + | 107977 | 90 | 23 | -25.5 | 5' arm 3' arm | |||
| 10770 | + | 98319 | 89 | 23 | -22.5 | NP_116409 | 5' arm 3' arm | ||
| 10992 | - | 66196 | 90 | 23 | -21.84 | NP_116390 | 5' arm 3' arm | ||
| 10748 | + | 71153 | 90 | 23 | -27.6 | NP_116397 | 5' arm 3' arm | ||
| 10894 | + | 180118 | 82 | 23 | -23.3 | NP_116470 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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