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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15870 | + | 165662 | 88 | 23 | -20.1 | YP_214109 | 5' arm 3' arm | ||
| 15889 | + | 187782 | 84 | 23 | -21.1 | YP_214131 | 5' arm 3' arm | ||
| 15856 | + | 149181 | 90 | 23 | -29.6 | YP_214104 | 5' arm 3' arm | ||
| 16018 | - | 64498 | 81 | 23 | -34.7 | 5' arm 3' arm | |||
| 15888 | + | 187448 | 83 | 23 | -23.5 | YP_214130 | 5' arm 3' arm | ||
| 15668 | + | 17662 | 89 | 23 | -28.4 | YP_214026 | 5' arm 3' arm | ||
| 15758 | + | 79992 | 89 | 23 | -23.3 | 5' arm 3' arm | |||
| 15927 | + | 225303 | 89 | 23 | -20.7 | YP_214166 | 5' arm 3' arm | ||
| 15711 | + | 52666 | 89 | 23 | -26.8 | YP_214051 | 5' arm 3' arm | ||
| 16133 | - | 139535 | 89 | 23 | -24.2 | YP_214096 | 5' arm 3' arm | ||
| 16172 | - | 170923 | 89 | 23 | -29.5 | YP_214113 | 5' arm 3' arm | ||
| 15817 | + | 123282 | 89 | 23 | -21.1 | 5' arm 3' arm | |||
| 15761 | + | 82346 | 85 | 23 | -20.7 | 5' arm 3' arm | |||
| 16068 | - | 92270 | 86 | 23 | -20.5 | YP_214069 | 5' arm 3' arm | ||
| 15862 | + | 154245 | 90 | 23 | -28.2 | YP_214106 | 5' arm 3' arm | ||
| 15867 | + | 163570 | 89 | 23 | -25 | 5' arm 3' arm | |||
| 16088 | - | 107503 | 88 | 23 | -26.8 | YP_214078 | 5' arm 3' arm | ||
| 16179 | - | 177744 | 90 | 23 | -21.6 | YP_214122 | 5' arm 3' arm | ||
| 15972 | - | 34464 | 89 | 23 | -22.9 | 5' arm 3' arm | |||
| 15830 | + | 131718 | 89 | 23 | -19.8 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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