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| GenBank Identifier | RefSeq Acc. | Name |
| 28373214 | NC_001347.2 | Human herpesvirus 5 (laboratory strain AD169) |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 1661 | + | 114476 | 90 | 24 | -20.9 | NP_040012 | 5' arm 3' arm | ||
| 1871 | - | 60062 | 90 | 24 | -22 | NP_039979 | 5' arm 3' arm | ||
| 30062 | - | 60421 | 90 | 24 | -22 | YP_081503 | 5' arm 3' arm | ||
| 29923 | + | 164504 | 90 | 24 | -21.8 | YP_081554 | #hcmv-mir-UL112 | 3' arm | |
| 1634 | + | 95519 | 90 | 24 | -24.9 | 5' arm 3' arm | |||
| 1987 | - | 163600 | 90 | 24 | -30.7 | NP_040050 | 5' arm 3' arm | ||
| 30230 | - | 214712 | 90 | 24 | -26.4 | YP_081605 | 5' arm 3' arm | ||
| 1788 | + | 212262 | 90 | 24 | -24.3 | NP_783806 | 5' arm 3' arm | ||
| 30138 | - | 132155 | 90 | 24 | -24.5 | YP_081535 | 5' arm 3' arm | ||
| 29834 | + | 114847 | 90 | 24 | -20.9 | YP_081526 | 5' arm 3' arm | ||
| 1745 | + | 164107 | 90 | 24 | -21.8 | NP_040051 | hcmv-mir-UL112 | ||
| 2052 | - | 228107 | 90 | 24 | -26.7 | NP_040122 | 5' arm 3' arm | ||
| 1813 | - | 20129 | 89 | 24 | -26.9 | NP_039947 | 5' arm 3' arm | ||
| 1946 | - | 131779 | 90 | 24 | -24.5 | NP_040022 | 5' arm 3' arm | ||
| 29730 | + | 32716 | 85 | 24 | -24.7 | YP_081485 | 5' arm 3' arm | ||
| 1620 | + | 87300 | 90 | 24 | -34.1 | 5' arm 3' arm | |||
| 1797 | + | 221791 | 90 | 24 | -23.7 | NP_040114 | 5' arm 3' arm | ||
| 2027 | - | 209428 | 90 | 24 | -26.4 | NP_783805 | 5' arm 3' arm | ||
| 30118 | - | 98291 | 90 | 24 | -23.9 | 5' arm 3' arm | |||
| 1927 | - | 97907 | 90 | 24 | -23.9 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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