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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16088 | - | 107503 | 88 | 23 | -26.8 | YP_214078 | 5' arm 3' arm | ||
| 15856 | + | 149181 | 90 | 23 | -29.6 | YP_214104 | 5' arm 3' arm | ||
| 16172 | - | 170923 | 89 | 23 | -29.5 | YP_214113 | 5' arm 3' arm | ||
| 15938 | - | 7449 | 81 | 23 | -29.5 | 5' arm 3' arm | |||
| 16175 | - | 174203 | 89 | 22.5 | -23.4 | YP_214119 | 5' arm 3' arm | ||
| 16059 | - | 88503 | 89 | 22.5 | -24.3 | 5' arm 3' arm | |||
| 15796 | + | 107607 | 85 | 22.5 | -23.5 | YP_214078 | 5' arm 3' arm | ||
| 16217 | - | 207469 | 90 | 22.5 | -22.8 | YP_214149 | 5' arm 3' arm | ||
| 16058 | - | 87634 | 90 | 22.5 | -22 | YP_214068 | 5' arm 3' arm | ||
| 15977 | - | 37378 | 88 | 22.5 | -22.4 | YP_214045 | 5' arm 3' arm | ||
| 15917 | + | 211857 | 89 | 22.5 | -28.7 | YP_214153 | 5' arm 3' arm | ||
| 15880 | + | 176279 | 89 | 22.5 | -32.42 | YP_214122 | 5' arm 3' arm | ||
| 15821 | + | 125890 | 90 | 22.5 | -25.6 | 5' arm 3' arm | |||
| 15958 | - | 27467 | 85 | 22.5 | -21.4 | YP_214034 | 5' arm 3' arm | ||
| 16224 | - | 212785 | 90 | 22.5 | -21.2 | YP_214153 | 5' arm 3' arm | ||
| 16046 | - | 78762 | 90 | 22.5 | -23.1 | YP_214066 | 5' arm 3' arm | ||
| 15739 | + | 68185 | 90 | 22.5 | -34.5 | 5' arm 3' arm | |||
| 15745 | + | 72027 | 90 | 22.5 | -22.2 | 5' arm 3' arm | |||
| 15788 | + | 101001 | 89 | 22.5 | -25.5 | YP_214073 | 5' arm 3' arm | ||
| 16002 | - | 53648 | 86 | 22.5 | -33.1 | YP_214052 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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