miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8910 - 29072 88 20.5 -21.2 NP_061535 5' arm      3' arm
8919 - 40576 88 20.5 -20.6 NP_061558 5' arm      3' arm
8905 - 18932 87 20.5 -20 NP_061523 5' arm      3' arm
8854 + 37473 90 20.5 -21.6 NP_061549 5' arm      3' arm
8814 + 14899 89 20.5 -27.4 NP_061519 5' arm      3' arm
8815 + 15539 90 20.5 -27.6 NP_061521 5' arm      3' arm
8864 + 44722 73 20.5 -22.9 NP_061564 5' arm      3' arm
8816 + 15727 89 20.5 -19.7 NP_061521 5' arm      3' arm
8927 - 47868 85 20 -21 NP_061569 5' arm      3' arm
8909 - 28733 88 20 -23.5 NP_061533 5' arm      3' arm
8839 + 29718 90 20 -24.4 NP_061536 5' arm      3' arm
8808 + 11412 90 20 -32.9 NP_061515 5' arm      3' arm
8922 - 43307 89 20 -24.2 NP_061562 5' arm      3' arm
8869 + 50828 89 20 -19.91 NP_061575 5' arm      3' arm
8932 - 52152 78 20 -21.7 NP_061578 5' arm      3' arm
8933 - 52979 90 20 -23.5 NP_061580 5' arm      3' arm
8806 + 10962 79 20 -21 NP_061514 5' arm      3' arm
8875 + 55430 90 20 -27.3 NP_061588 5' arm      3' arm
8903 - 17892 88 20 -24.5 NP_061522 5' arm      3' arm
8870 + 51342 87 20 -21.3 NP_061576 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.