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| GenBank Identifier | RefSeq Acc. | Name |
| 28373214 | NC_001347.2 | Human herpesvirus 5 (laboratory strain AD169) |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 1813 | - | 20129 | 89 | 24 | -26.9 | NP_039947 | 5' arm 3' arm | ||
| 1745 | + | 164107 | 90 | 24 | -21.8 | NP_040051 | hcmv-mir-UL112 | ||
| 1946 | - | 131779 | 90 | 24 | -24.5 | NP_040022 | 5' arm 3' arm | ||
| 29997 | - | 20467 | 89 | 24 | -26.9 | YP_081472 | 5' arm 3' arm | ||
| 29812 | + | 99589 | 89 | 23.5 | -28.3 | YP_081517 | 5' arm 3' arm | ||
| 2011 | - | 193905 | 88 | 23.5 | -27.3 | 5' arm 3' arm | |||
| 1654 | + | 105671 | 89 | 23.5 | -24.94 | NP_040006 | 5' arm 3' arm | ||
| 1865 | - | 57076 | 90 | 23.5 | -35.7 | NP_039978 | 5' arm 3' arm | ||
| 30056 | - | 57435 | 90 | 23.5 | -35.7 | YP_081502 | 5' arm 3' arm | ||
| 30164 | - | 155338 | 90 | 23.5 | -22.7 | YP_081551 | 5' arm 3' arm | ||
| 1677 | + | 121496 | 89 | 23.5 | -22.5 | NP_040018 | 5' arm 3' arm | ||
| 30096 | - | 79634 | 89 | 23.5 | -24.2 | YP_081513 | 5' arm 3' arm | ||
| 29829 | + | 106054 | 89 | 23.5 | -24.94 | YP_081520 | 5' arm 3' arm | ||
| 1587 | + | 48666 | 90 | 23.5 | -20.5 | NP_039970 | 5' arm 3' arm | ||
| 30211 | - | 199189 | 88 | 23.5 | -27.3 | 5' arm 3' arm | |||
| 1762 | + | 182740 | 88 | 23.5 | -21.7 | 5' arm 3' arm | |||
| 1631 | + | 94470 | 90 | 23.5 | -23.6 | 5' arm 3' arm | |||
| 1973 | - | 154962 | 90 | 23.5 | -22.7 | NP_040040 | 5' arm 3' arm | ||
| 1568 | + | 38908 | 86 | 23.5 | -32.8 | NP_783780 | 5' arm 3' arm | ||
| 30191 | - | 187967 | 89 | 23.5 | -19.5 | YP_081578 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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