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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15739 | + | 68185 | 90 | 22.5 | -34.5 | 5' arm 3' arm | |||
| 15745 | + | 72027 | 90 | 22.5 | -22.2 | 5' arm 3' arm | |||
| 16221 | - | 209865 | 90 | 22.5 | -25.6 | YP_214151 | 5' arm 3' arm | ||
| 16175 | - | 174203 | 89 | 22.5 | -23.4 | YP_214119 | 5' arm 3' arm | ||
| 15958 | - | 27467 | 85 | 22.5 | -21.4 | YP_214034 | 5' arm 3' arm | ||
| 15947 | - | 21743 | 90 | 22.5 | -19.9 | YP_214028 | 5' arm 3' arm | ||
| 16224 | - | 212785 | 90 | 22.5 | -21.2 | YP_214153 | 5' arm 3' arm | ||
| 16232 | - | 227186 | 90 | 22.5 | -23.6 | 5' arm 3' arm | |||
| 15796 | + | 107607 | 85 | 22.5 | -23.5 | YP_214078 | 5' arm 3' arm | ||
| 15824 | + | 126858 | 89 | 22.5 | -20.72 | 5' arm 3' arm | |||
| 16047 | - | 80433 | 90 | 22 | -27.9 | 5' arm 3' arm | |||
| 16035 | - | 71879 | 89 | 22 | -28.6 | 5' arm 3' arm | |||
| 15774 | + | 90989 | 89 | 22 | -22.6 | 5' arm 3' arm | |||
| 15771 | + | 89803 | 87 | 22 | -25.2 | 5' arm 3' arm | |||
| 15847 | + | 142617 | 85 | 22 | -23 | YP_214099 | 5' arm 3' arm | ||
| 16041 | - | 75862 | 87 | 22 | -23.7 | YP_214063 | 5' arm 3' arm | ||
| 16073 | - | 93319 | 89 | 22 | -24.2 | YP_214070 | 5' arm 3' arm | ||
| 16092 | - | 109485 | 85 | 22 | -23.4 | YP_214080 | 5' arm 3' arm | ||
| 16095 | - | 110646 | 87 | 22 | -21.3 | YP_214080 | 5' arm 3' arm | ||
| 16054 | - | 83450 | 88 | 22 | -25.2 | YP_214067 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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