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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28995 | - | 29713 | 85 | 22.5 | -24.5 | 5' arm 3' arm | |||
| 29054 | - | 93095 | 90 | 22.5 | -24.3 | YP_067976 | 5' arm 3' arm | ||
| 29104 | - | 129623 | 90 | 22.5 | -22.2 | 5' arm 3' arm | |||
| 28843 | + | 110300 | 90 | 22.5 | -25.3 | YP_067990 | 5' arm 3' arm | ||
| 28784 | + | 49821 | 89 | 22.5 | -31.5 | YP_067950 | 5' arm 3' arm | ||
| 28886 | + | 142269 | 84 | 22.5 | -28.9 | 5' arm 3' arm | |||
| 28862 | + | 131753 | 89 | 22.5 | -27.3 | YP_068002 | 5' arm 3' arm | ||
| 28969 | - | 20470 | 85 | 22.5 | -24.5 | 5' arm 3' arm | |||
| 28960 | - | 17389 | 85 | 22.5 | -24.5 | 5' arm 3' arm | |||
| 29131 | - | 151908 | 88 | 22.5 | -28.2 | YP_068008 | 5' arm 3' arm | ||
| 29037 | - | 79348 | 89 | 22.5 | -28.51 | YP_067966 | 5' arm 3' arm | ||
| 28978 | - | 23551 | 85 | 22.5 | -24.5 | 5' arm 3' arm | |||
| 29015 | - | 47978 | 86 | 22.5 | -30 | YP_067950 | 5' arm 3' arm | ||
| 28823 | + | 89446 | 86 | 22.5 | -36.4 | YP_067972 | 5' arm 3' arm | ||
| 29036 | - | 78615 | 89 | 22.5 | -24.3 | YP_067966 | 5' arm 3' arm | ||
| 28929 | + | 164539 | 88 | 22.5 | -21.8 | YP_068017 | 5' arm 3' arm | ||
| 28828 | + | 94429 | 86 | 22.5 | -24.6 | YP_067977 | 5' arm 3' arm | ||
| 28776 | + | 46715 | 90 | 22.5 | -20.9 | YP_067950 | 5' arm 3' arm | ||
| 29020 | - | 56566 | 79 | 22.5 | -25.6 | YP_067951 | 5' arm 3' arm | ||
| 28813 | + | 73553 | 90 | 22.5 | -20.4 | YP_067965 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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