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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15993 | - | 47373 | 87 | 22 | -24 | YP_214048 | 5' arm 3' arm | ||
| 16171 | - | 170656 | 89 | 22 | -26 | YP_214113 | 5' arm 3' arm | ||
| 15928 | + | 225554 | 88 | 22 | -34.2 | 5' arm 3' arm | |||
| 16041 | - | 75862 | 87 | 22 | -23.7 | YP_214063 | 5' arm 3' arm | ||
| 16054 | - | 83450 | 88 | 22 | -25.2 | YP_214067 | 5' arm 3' arm | ||
| 16033 | - | 70410 | 88 | 22 | -23.2 | 5' arm 3' arm | |||
| 16218 | - | 207866 | 88 | 22 | -20.8 | YP_214149 | 5' arm 3' arm | ||
| 15825 | + | 127352 | 90 | 22 | -25.6 | YP_214088 | 5' arm 3' arm | ||
| 16035 | - | 71879 | 89 | 22 | -28.6 | 5' arm 3' arm | |||
| 15980 | - | 38695 | 89 | 22 | -20.3 | YP_214045 | 5' arm 3' arm | ||
| 15774 | + | 90989 | 89 | 22 | -22.6 | 5' arm 3' arm | |||
| 16003 | - | 54425 | 89 | 22 | -25 | YP_214054 | 5' arm 3' arm | ||
| 16219 | - | 207988 | 89 | 22 | -25.1 | YP_214150 | 5' arm 3' arm | ||
| 15983 | - | 43119 | 89 | 22 | -24.7 | 5' arm 3' arm | |||
| 15986 | - | 44141 | 88 | 22 | -29.2 | YP_214047 | 5' arm 3' arm | ||
| 15771 | + | 89803 | 87 | 22 | -25.2 | 5' arm 3' arm | |||
| 16150 | - | 147657 | 89 | 22 | -21.4 | YP_214102 | 5' arm 3' arm | ||
| 16233 | - | 229144 | 88 | 22 | -21.6 | 5' arm 3' arm | |||
| 16156 | - | 151681 | 90 | 22 | -22 | YP_214105 | 5' arm 3' arm | ||
| 16025 | - | 66519 | 90 | 22 | -26.2 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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