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| GenBank Identifier | RefSeq Acc. | Name |
| 14250967 | NC_002794.1 | Tupaia herpesvirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10711 | + | 10567 | 90 | 21.5 | -28.5 | NP_116336 | 5' arm 3' arm | ||
| 10710 | + | 9881 | 89 | 21.5 | -22.9 | 5' arm 3' arm | |||
| 11032 | - | 89758 | 90 | 21.5 | -28.1 | NP_116405 | 5' arm 3' arm | ||
| 11099 | - | 140864 | 89 | 21.5 | -19.8 | NP_116436 | 5' arm 3' arm | ||
| 10783 | + | 110459 | 89 | 21.5 | -22 | 5' arm 3' arm | |||
| 10744 | + | 65067 | 89 | 21.5 | -28.1 | NP_116387 | 5' arm 3' arm | ||
| 10800 | + | 120399 | 90 | 21.5 | -23.5 | NP_116424 | 5' arm 3' arm | ||
| 10809 | + | 126030 | 90 | 21.5 | -24.4 | NP_116428 | 5' arm 3' arm | ||
| 10806 | + | 124136 | 90 | 21.5 | -22.5 | NP_116427 | 5' arm 3' arm | ||
| 10740 | + | 54500 | 90 | 21.5 | -32.9 | NP_116381 | 5' arm 3' arm | ||
| 11047 | - | 95654 | 90 | 21.5 | -28.4 | NP_116408 | 5' arm 3' arm | ||
| 10991 | - | 65796 | 88 | 21.5 | -26.8 | NP_116389 | 5' arm 3' arm | ||
| 11084 | - | 115616 | 89 | 21.5 | -26.3 | NP_116420 | 5' arm 3' arm | ||
| 10910 | + | 192256 | 84 | 21.5 | -31.8 | 5' arm 3' arm | |||
| 10751 | + | 74419 | 90 | 21.5 | -28.8 | NP_116398 | 5' arm 3' arm | ||
| 11010 | - | 77262 | 89 | 21.5 | -24.5 | NP_116400 | 5' arm 3' arm | ||
| 10802 | + | 121095 | 90 | 21.5 | -22.6 | NP_116425 | 5' arm 3' arm | ||
| 10905 | + | 187315 | 90 | 21.5 | -19.9 | NP_116478 | 5' arm 3' arm | ||
| 11098 | - | 140151 | 87 | 21.5 | -20.7 | NP_116436 | 5' arm 3' arm | ||
| 10807 | + | 124263 | 90 | 21.5 | -19.8 | NP_116427 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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