miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26502 + 20013 88 20.5 -27.6 NP_958687 5' arm      3' arm
26507 + 21763 89 20.5 -21.1 NP_958690 5' arm      3' arm
26613 - 38816 88 20.5 -21 NP_958712 5' arm      3' arm
26512 + 22874 89 20 -26.2 NP_958691 5' arm      3' arm
26456 + 5330 89 20 -25.5 NP_958678 5' arm      3' arm
26534 + 39342 87 20 -26.8 NP_958715 5' arm      3' arm
26525 + 31275 84 20 -25.1 NP_958701 5' arm      3' arm
26452 + 4583 89 20 -23.8 NP_958678 5' arm      3' arm
26610 - 37991 90 20 -23.7 NP_958711 5' arm      3' arm
26539 - 1050 90 20 -25.3 NP_958672 5' arm      3' arm
26459 + 6247 85 20 -23.1 NP_958679 5' arm      3' arm
26560 - 17321 80 20 -25.3 NP_958683 5' arm      3' arm
26514 + 24501 89 20 -22.3 NP_958694 5' arm      3' arm
26517 + 26174 83 20 -23.8 NP_958695 5' arm      3' arm
26518 + 26842 90 20 -23.2 NP_958697 5' arm      3' arm
26556 - 15516 89 20 -26.63 NP_958682 5' arm      3' arm
26558 - 16221 90 20 -22.1 NP_958682 5' arm      3' arm
26601 - 35934 90 20 -20.5 NP_958709 5' arm      3' arm
26561 - 18015 90 20 -25.8 5' arm      3' arm
26478 + 13523 83 20 -27 NP_958680 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.