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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23741 | - | 27221 | 89 | 21.5 | -22.4 | NP_954909 | 5' arm 3' arm | ||
| 23608 | + | 52074 | 88 | 21 | -20.6 | NP_954918 | 5' arm 3' arm | ||
| 23770 | - | 63064 | 90 | 21 | -25.7 | NP_954923 | 5' arm 3' arm | ||
| 23671 | + | 103509 | 85 | 21 | -23.44 | NP_954952 | 5' arm 3' arm | ||
| 23789 | - | 76947 | 90 | 21 | -29.9 | NP_954931 | 5' arm 3' arm | ||
| 23821 | - | 100161 | 88 | 21 | -27.1 | NP_954947 | 5' arm 3' arm | ||
| 23737 | - | 26037 | 88 | 21 | -23 | NP_954908 | 5' arm 3' arm | ||
| 23786 | - | 74953 | 85 | 21 | -22.2 | NP_954929 | 5' arm 3' arm | ||
| 23637 | + | 80148 | 86 | 21 | -23.4 | NP_954933 | 5' arm 3' arm | ||
| 23576 | + | 23416 | 90 | 21 | -20.3 | NP_954907 | 5' arm 3' arm | ||
| 23577 | + | 23748 | 90 | 21 | -19.5 | NP_954907 | 5' arm 3' arm | ||
| 23587 | + | 29616 | 89 | 21 | -25.5 | NP_954910 | 5' arm 3' arm | ||
| 23586 | + | 28586 | 90 | 21 | -24.8 | NP_954909 | 5' arm 3' arm | ||
| 23811 | - | 93358 | 89 | 21 | -30.3 | NP_954941 | 5' arm 3' arm | ||
| 23805 | - | 88637 | 89 | 21 | -19.4 | NP_954939 | 5' arm 3' arm | ||
| 23599 | + | 46927 | 90 | 21 | -24.2 | NP_954917 | 5' arm 3' arm | ||
| 23672 | + | 104044 | 88 | 21 | -24.1 | NP_954951 | 5' arm 3' arm | ||
| 23652 | + | 92399 | 89 | 21 | -20.5 | NP_954940 | 5' arm 3' arm | ||
| 23615 | + | 56671 | 88 | 21 | -23.4 | NP_954920 | 5' arm 3' arm | ||
| 23782 | - | 71581 | 90 | 21 | -23.3 | NP_954929 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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