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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28813 | + | 73553 | 90 | 22.5 | -20.4 | YP_067965 | 5' arm 3' arm | ||
| 28929 | + | 164539 | 88 | 22.5 | -21.8 | YP_068017 | 5' arm 3' arm | ||
| 28757 | + | 30273 | 83 | 22.5 | -30.8 | 5' arm 3' arm | |||
| 29103 | - | 129272 | 89 | 22.5 | -21 | 5' arm 3' arm | |||
| 28746 | + | 19149 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
| 28749 | + | 22230 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
| 29148 | - | 161995 | 85 | 22 | -25.9 | 5' arm 3' arm | |||
| 29033 | - | 73583 | 81 | 22 | -24.5 | 5' arm 3' arm | |||
| 29106 | - | 130411 | 89 | 22 | -19.7 | YP_068001 | 5' arm 3' arm | ||
| 29089 | - | 119843 | 90 | 22 | -22.8 | YP_067995 | 5' arm 3' arm | ||
| 29034 | - | 74317 | 90 | 22 | -24.23 | YP_067965 | 5' arm 3' arm | ||
| 28790 | + | 52384 | 90 | 22 | -23.7 | YP_067950 | 5' arm 3' arm | ||
| 29121 | - | 143460 | 90 | 22 | -25 | 5' arm 3' arm | |||
| 28779 | + | 47717 | 90 | 22 | -23 | YP_067950 | 5' arm 3' arm | ||
| 29001 | - | 32056 | 89 | 22 | -21.1 | YP_067943 | 5' arm 3' arm | ||
| 28752 | + | 25311 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
| 28887 | + | 142470 | 90 | 22 | -28.9 | 5' arm 3' arm | |||
| 29069 | - | 100320 | 90 | 22 | -26.8 | YP_067981 | 5' arm 3' arm | ||
| 29024 | - | 61433 | 89 | 22 | -19.8 | YP_067955 | 5' arm 3' arm | ||
| 28768 | + | 41433 | 90 | 22 | -27.5 | YP_067948 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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