miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638196 NC_005264.1 Psittacid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24436 + 71906 89 21.5 -28.1 NP_944412 5' arm      3' arm
24415 + 59841 90 21.5 -23.9 NP_944409 5' arm      3' arm
24639 - 87280 90 21.5 -23.1 NP_944420 5' arm      3' arm
24664 - 101502 89 21.5 -20.7 NP_944430 5' arm      3' arm
24427 + 65447 89 21.5 -24.1 NP_944409 5' arm      3' arm
24410 + 56983 89 21.5 -26.7 NP_944409 5' arm      3' arm
24413 + 58066 90 21.5 -27 NP_944409 5' arm      3' arm
24657 - 95353 88 21.5 -23.7 NP_944424 5' arm      3' arm
24746 - 149815 89 21.5 -21.3 5' arm      3' arm
24740 - 146308 89 21.5 -22.6 NP_944450 5' arm      3' arm
24621 - 72218 87 21.5 -24.9 NP_944412 5' arm      3' arm
24373 + 34239 89 21.5 -23.7 NP_944397 5' arm      3' arm
24637 - 86447 90 21.5 -21.4 NP_944420 5' arm      3' arm
24375 + 35931 89 21.5 -21.4 NP_944398 5' arm      3' arm
24507 + 133021 85 21.5 -20.6 5' arm      3' arm
24383 + 41092 79 21.5 -35.2 5' arm      3' arm
24385 + 42424 88 21.5 -21.62 NP_944401 5' arm      3' arm
24391 + 44291 90 21.5 -23.2 NP_944402 5' arm      3' arm
24762 - 161431 90 21.5 -20.1 5' arm      3' arm
24420 + 61131 83 21.5 -20.8 NP_944409 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.