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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15751 | + | 75979 | 87 | 22 | -23.4 | YP_214063 | 5' arm 3' arm | ||
| 16101 | - | 114824 | 87 | 22 | -27.6 | YP_214083 | 5' arm 3' arm | ||
| 15928 | + | 225554 | 88 | 22 | -34.2 | 5' arm 3' arm | |||
| 16233 | - | 229144 | 88 | 22 | -21.6 | 5' arm 3' arm | |||
| 16041 | - | 75862 | 87 | 22 | -23.7 | YP_214063 | 5' arm 3' arm | ||
| 16150 | - | 147657 | 89 | 22 | -21.4 | YP_214102 | 5' arm 3' arm | ||
| 15731 | + | 62245 | 88 | 22 | -19.8 | YP_214058 | 5' arm 3' arm | ||
| 15983 | - | 43119 | 89 | 22 | -24.7 | 5' arm 3' arm | |||
| 16177 | - | 176367 | 89 | 22 | -29.41 | YP_214122 | 5' arm 3' arm | ||
| 16073 | - | 93319 | 89 | 22 | -24.2 | YP_214070 | 5' arm 3' arm | ||
| 15781 | + | 96307 | 88 | 22 | -29.6 | YP_214071 | 5' arm 3' arm | ||
| 16173 | - | 171939 | 90 | 22 | -24.4 | YP_214114 | 5' arm 3' arm | ||
| 15986 | - | 44141 | 88 | 22 | -29.2 | YP_214047 | 5' arm 3' arm | ||
| 15873 | + | 167342 | 89 | 21.5 | -26.8 | YP_214111 | 5' arm 3' arm | ||
| 15722 | + | 58155 | 90 | 21.5 | -22.5 | YP_214056 | 5' arm 3' arm | ||
| 15786 | + | 98221 | 86 | 21.5 | -24.5 | YP_214071 | 5' arm 3' arm | ||
| 15779 | + | 95210 | 87 | 21.5 | -21.82 | 5' arm 3' arm | |||
| 16174 | - | 173742 | 90 | 21.5 | -22.2 | YP_214118 | 5' arm 3' arm | ||
| 15717 | + | 55947 | 89 | 21.5 | -35.2 | YP_214055 | 5' arm 3' arm | ||
| 15673 | + | 19339 | 88 | 21.5 | -20.6 | YP_214026 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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