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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23789 | - | 76947 | 90 | 21 | -29.9 | NP_954931 | 5' arm 3' arm | ||
| 23722 | - | 19068 | 89 | 21 | -25.6 | NP_954903 | 5' arm 3' arm | ||
| 23671 | + | 103509 | 85 | 21 | -23.44 | NP_954952 | 5' arm 3' arm | ||
| 23782 | - | 71581 | 90 | 21 | -23.3 | NP_954929 | 5' arm 3' arm | ||
| 23587 | + | 29616 | 89 | 21 | -25.5 | NP_954910 | 5' arm 3' arm | ||
| 23589 | + | 32572 | 90 | 21 | -25.2 | NP_954911 | 5' arm 3' arm | ||
| 23592 | + | 41577 | 90 | 21 | -27.1 | NP_954911 | 5' arm 3' arm | ||
| 23596 | + | 45111 | 90 | 21 | -25.7 | NP_954915 | 5' arm 3' arm | ||
| 23798 | - | 83812 | 89 | 21 | -21.2 | NP_954935 | 5' arm 3' arm | ||
| 23786 | - | 74953 | 85 | 21 | -22.2 | NP_954929 | 5' arm 3' arm | ||
| 23599 | + | 46927 | 90 | 21 | -24.2 | NP_954917 | 5' arm 3' arm | ||
| 23818 | - | 97404 | 90 | 21 | -22.2 | NP_954943 | 5' arm 3' arm | ||
| 23608 | + | 52074 | 88 | 21 | -20.6 | NP_954918 | 5' arm 3' arm | ||
| 23811 | - | 93358 | 89 | 21 | -30.3 | NP_954941 | 5' arm 3' arm | ||
| 23672 | + | 104044 | 88 | 21 | -24.1 | NP_954951 | 5' arm 3' arm | ||
| 23833 | - | 115526 | 90 | 20.5 | -33.3 | NP_954954 | 5' arm 3' arm | ||
| 23617 | + | 57966 | 90 | 20.5 | -21.4 | NP_954920 | 5' arm 3' arm | ||
| 23618 | + | 58089 | 89 | 20.5 | -23.6 | NP_954920 | 5' arm 3' arm | ||
| 23763 | - | 57153 | 90 | 20.5 | -28.8 | NP_954920 | 5' arm 3' arm | ||
| 23614 | + | 56025 | 90 | 20.5 | -26.6 | NP_954919 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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