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| GenBank Identifier | RefSeq Acc. | Name |
| 51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28905 | + | 149307 | 89 | 22 | -25.5 | YP_068007 | 5' arm 3' arm | ||
| 28779 | + | 47717 | 90 | 22 | -23 | YP_067950 | 5' arm 3' arm | ||
| 29148 | - | 161995 | 85 | 22 | -25.9 | 5' arm 3' arm | |||
| 29001 | - | 32056 | 89 | 22 | -21.1 | YP_067943 | 5' arm 3' arm | ||
| 28768 | + | 41433 | 90 | 22 | -27.5 | YP_067948 | 5' arm 3' arm | ||
| 29024 | - | 61433 | 89 | 22 | -19.8 | YP_067955 | 5' arm 3' arm | ||
| 29089 | - | 119843 | 90 | 22 | -22.8 | YP_067995 | 5' arm 3' arm | ||
| 28758 | + | 30367 | 87 | 22 | -20.8 | 5' arm 3' arm | |||
| 28755 | + | 28392 | 88 | 22 | -24.5 | 5' arm 3' arm | |||
| 29069 | - | 100320 | 90 | 22 | -26.8 | YP_067981 | 5' arm 3' arm | ||
| 29121 | - | 143460 | 90 | 22 | -25 | 5' arm 3' arm | |||
| 29109 | - | 133631 | 86 | 21.5 | -22.9 | 5' arm 3' arm | |||
| 28924 | + | 162144 | 89 | 21.5 | -25.8 | 5' arm 3' arm | |||
| 28922 | + | 160728 | 89 | 21.5 | -27.6 | YP_068013 | 5' arm 3' arm | ||
| 29111 | - | 134096 | 89 | 21.5 | -22.1 | 5' arm 3' arm | |||
| 29078 | - | 108162 | 90 | 21.5 | -21.4 | YP_067988 | 5' arm 3' arm | ||
| 28777 | + | 47312 | 88 | 21.5 | -23.8 | YP_067950 | 5' arm 3' arm | ||
| 28850 | + | 115550 | 82 | 21.5 | -24.9 | YP_067994 | 5' arm 3' arm | ||
| 29026 | - | 61841 | 87 | 21.5 | -21.4 | YP_067955 | 5' arm 3' arm | ||
| 28839 | + | 105866 | 89 | 21.5 | -21.9 | YP_067986 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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