miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18275 + 16521 86 20 -26.2 NP_817472 5' arm      3' arm
18283 + 22254 87 23.5 -28.8 NP_817475 5' arm      3' arm
18278 + 18468 86 21 -23.3 NP_817472 5' arm      3' arm
18282 + 21370 89 20.5 -26 NP_817474 5' arm      3' arm
18284 + 22349 88 20 -21.3 NP_817475 5' arm      3' arm
18285 + 22891 89 20 -25.2 NP_817475 5' arm      3' arm
18289 + 26480 86 20.5 -23.9 NP_817477 5' arm      3' arm
18291 + 27015 87 21 -29.2 NP_817477 5' arm      3' arm
18281 + 20439 90 19 -31.5 NP_817473 5' arm      3' arm
18279 + 18845 87 19 -28.1 NP_817473 5' arm      3' arm
18280 + 19780 90 19.5 -25.4 NP_817473 5' arm      3' arm
18529 - 70724 89 24 -29.4 5' arm      3' arm
18534 - 73242 89 19 -19.4 NP_817584 5' arm      3' arm
18531 - 71140 80 19.5 -25.1 NP_817578 5' arm      3' arm
18533 - 72939 87 20.5 -20 NP_817584 5' arm      3' arm
18535 - 74047 87 20.5 -30.5 NP_817587 5' arm      3' arm
18532 - 72284 88 21.5 -22.3 NP_817581 5' arm      3' arm
18536 - 75435 90 22.5 -21.8 5' arm      3' arm
18538 - 75733 87 23.5 -23.9 5' arm      3' arm
18361 - 3140 90 19.5 -29.41 NP_817458 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.