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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID |
strand
|
start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15734 | + | 63375 | 88 | 23 | -29 | YP_214059 | 5' arm 3' arm | ||
| 15730 | + | 61958 | 89 | 22.5 | -25.8 | YP_214058 | 5' arm 3' arm | ||
| 15710 | + | 51034 | 85 | 21.5 | -21.5 | YP_214050 | 5' arm 3' arm | ||
| 15711 | + | 52666 | 89 | 23 | -26.8 | YP_214051 | 5' arm 3' arm | ||
| 15709 | + | 50778 | 88 | 24 | -28.5 | YP_214050 | 5' arm 3' arm | ||
| 15693 | + | 37903 | 89 | 20.5 | -24.2 | YP_214045 | 5' arm 3' arm | ||
| 15694 | + | 38502 | 82 | 20.5 | -21.73 | YP_214045 | 5' arm 3' arm | ||
| 15696 | + | 40640 | 90 | 20.5 | -21.8 | YP_214046 | 5' arm 3' arm | ||
| 15701 | + | 44054 | 88 | 20.5 | -25.9 | YP_214047 | 5' arm 3' arm | ||
| 15702 | + | 45119 | 87 | 20.5 | -24.8 | YP_214047 | 5' arm 3' arm | ||
| 15700 | + | 42101 | 90 | 20 | -23.6 | 5' arm 3' arm | |||
| 15698 | + | 41658 | 90 | 19.5 | -23.7 | 5' arm 3' arm | |||
| 15731 | + | 62245 | 88 | 22 | -19.8 | YP_214058 | 5' arm 3' arm | ||
| 15699 | + | 41873 | 90 | 19.5 | -24.6 | 5' arm 3' arm | |||
| 15707 | + | 48200 | 90 | 24 | -20.9 | 5' arm 3' arm | |||
| 15705 | + | 47670 | 90 | 23.5 | -24.2 | 5' arm 3' arm | |||
| 15708 | + | 48508 | 88 | 21.5 | -24.6 | 5' arm 3' arm | |||
| 15703 | + | 45641 | 89 | 20 | -24.3 | 5' arm 3' arm | |||
| 15706 | + | 48109 | 89 | 20 | -19.81 | 5' arm 3' arm | |||
| 15704 | + | 47340 | 89 | 19.5 | -28.9 | YP_214048 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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