miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18492 - 53555 88 26 -19.7 NP_817536 5' arm      3' arm
18494 - 54388 89 21.5 -20.8 NP_817538 5' arm      3' arm
18533 - 72939 87 20.5 -20 NP_817584 5' arm      3' arm
18529 - 70724 89 24 -29.4 5' arm      3' arm
18525 - 68566 87 21.5 -25.2 NP_817569 5' arm      3' arm
18527 - 68946 88 20.5 -24.8 NP_817571 5' arm      3' arm
18513 - 62146 86 22.5 -24.3 NP_817552 5' arm      3' arm
18519 - 64835 90 19.5 -24.6 NP_817560 5' arm      3' arm
18507 - 59002 90 23 -28.7 NP_817546 5' arm      3' arm
18509 - 59669 88 22 -23.2 NP_817548 5' arm      3' arm
18458 - 40850 89 20.5 -20 5' arm      3' arm
18454 - 40116 89 21.5 -22.6 NP_817504 5' arm      3' arm
18493 - 53881 87 20 -22.5 NP_817537 5' arm      3' arm
18487 - 51603 89 23 -23.4 NP_817531 5' arm      3' arm
18490 - 52197 89 21 -21.9 NP_817531 5' arm      3' arm
18480 - 50221 89 20.5 -22.9 NP_817528 5' arm      3' arm
18481 - 50510 90 19.5 -22.8 NP_817529 5' arm      3' arm
18475 - 47304 89 24 -22.7 NP_817519 5' arm      3' arm
18471 - 45774 90 20 -21.2 NP_817517 5' arm      3' arm
18463 - 42264 90 26.5 -29.8 NP_817508 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.