miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29565879 NC_004681.1 Mycobacteriophage CJW1 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18496 - 54827 86 19 -26.6 NP_817538 5' arm      3' arm
18482 - 50729 90 22 -24 NP_817529 5' arm      3' arm
18489 - 52091 90 21 -23.9 NP_817531 5' arm      3' arm
18477 - 48617 87 20.5 -23.9 NP_817523 5' arm      3' arm
18491 - 52722 90 19 -27.3 NP_817533 5' arm      3' arm
18471 - 45774 90 20 -21.2 NP_817517 5' arm      3' arm
18463 - 42264 90 26.5 -29.8 NP_817508 5' arm      3' arm
18509 - 59669 88 22 -23.2 NP_817548 5' arm      3' arm
18507 - 59002 90 23 -28.7 NP_817546 5' arm      3' arm
18519 - 64835 90 19.5 -24.6 NP_817560 5' arm      3' arm
18453 - 39657 89 19.5 -22.1 NP_817502 5' arm      3' arm
18446 - 35959 88 22 -24.5 NP_817493 5' arm      3' arm
18447 - 36304 82 20.5 -19.7 NP_817494 5' arm      3' arm
18443 - 35370 90 19 -22.8 NP_817491 5' arm      3' arm
18442 - 33662 89 21 -25.9 NP_817486 5' arm      3' arm
18533 - 72939 87 20.5 -20 NP_817584 5' arm      3' arm
18529 - 70724 89 24 -29.4 5' arm      3' arm
18525 - 68566 87 21.5 -25.2 NP_817569 5' arm      3' arm
18527 - 68946 88 20.5 -24.8 NP_817571 5' arm      3' arm
18513 - 62146 86 22.5 -24.3 NP_817552 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.