miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17174 - 27260 89 19 -29.2 NP_705663 5' arm      3' arm
17159 - 21630 89 22.5 -25.3 NP_705654 5' arm      3' arm
17161 - 21881 89 21.5 -21.1 NP_705654 5' arm      3' arm
17160 - 21751 90 19.5 -20.3 NP_705654 5' arm      3' arm
17154 - 18364 88 23 -24.1 NP_705647 5' arm      3' arm
17151 - 17309 90 19 -24.1 NP_705646 5' arm      3' arm
17142 - 13216 90 22.5 -21.9 NP_705643 5' arm      3' arm
17182 - 30442 90 22 -23.6 NP_705668 5' arm      3' arm
17190 - 35128 89 19.5 -25.1 NP_705672 5' arm      3' arm
17194 - 37934 90 21.5 -29.8 NP_705675 5' arm      3' arm
17134 - 10931 89 21.5 -24.2 NP_705641 5' arm      3' arm
17135 - 11183 88 20 -20 NP_705642 5' arm      3' arm
17123 - 7470 88 20 -25 NP_705638 5' arm      3' arm
17129 - 9837 89 19 -26.7 NP_705640 5' arm      3' arm
17121 - 6812 90 21.5 -20 NP_705637 5' arm      3' arm
17211 - 44133 87 22.5 -22.8 5' arm      3' arm
17214 - 45208 90 19.5 -20.9 NP_705685 5' arm      3' arm
17207 - 42801 89 23.5 -28.6 NP_705683 5' arm      3' arm
17201 - 40668 89 21.5 -21.6 5' arm      3' arm
17206 - 42204 87 19.5 -24.2 NP_705681 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.