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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID |
strand
|
start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23810 | - | 93001 | 87 | 20.5 | -26.4 | NP_954941 | 5' arm 3' arm | ||
| 23806 | - | 88994 | 90 | 19.5 | -21.2 | NP_954939 | 5' arm 3' arm | ||
| 23800 | - | 84844 | 89 | 22.5 | -26.8 | NP_954936 | 5' arm 3' arm | ||
| 23804 | - | 87979 | 89 | 19 | -29.5 | NP_954939 | 5' arm 3' arm | ||
| 23798 | - | 83812 | 89 | 21 | -21.2 | NP_954935 | 5' arm 3' arm | ||
| 23789 | - | 76947 | 90 | 21 | -29.9 | NP_954931 | 5' arm 3' arm | ||
| 23783 | - | 72864 | 90 | 22.5 | -21.3 | NP_954929 | 5' arm 3' arm | ||
| 23832 | - | 115352 | 90 | 20 | -21.5 | NP_954963 | 5' arm 3' arm | ||
| 23831 | - | 114205 | 87 | 22 | -24.3 | 5' arm 3' arm | |||
| 23836 | - | 117693 | 87 | 20 | -21.8 | NP_954956 | 5' arm 3' arm | ||
| 23777 | - | 68679 | 89 | 19 | -24.6 | NP_954927 | 5' arm 3' arm | ||
| 23765 | - | 57726 | 89 | 22.5 | -19.8 | NP_954920 | 5' arm 3' arm | ||
| 23766 | - | 58016 | 90 | 20 | -21.6 | NP_954920 | 5' arm 3' arm | ||
| 23761 | - | 55713 | 87 | 23.5 | -26.3 | NP_954919 | 5' arm 3' arm | ||
| 23760 | - | 54530 | 87 | 19.5 | -25.8 | NP_954919 | 5' arm 3' arm | ||
| 23852 | - | 127576 | 90 | 22 | -37.3 | NP_954963 | 5' arm 3' arm | ||
| 23849 | - | 125603 | 90 | 21.5 | -26.2 | NP_954961 | 5' arm 3' arm | ||
| 23845 | - | 121554 | 88 | 20.5 | -26.1 | NP_954959 | 5' arm 3' arm | ||
| 23842 | - | 120215 | 89 | 20 | -25.8 | NP_954958 | 5' arm 3' arm | ||
| 23835 | - | 116381 | 90 | 21.5 | -23.6 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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