miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
21716071 NC_004065.1 Murid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16141 - 141740 88 21.5 -22.2 YP_214098 5' arm      3' arm
16138 - 141370 90 20 -24.5 YP_214098 5' arm      3' arm
16134 - 140261 90 19 -35.9 YP_214098 5' arm      3' arm
16132 - 139393 90 20.5 -21.1 YP_214096 5' arm      3' arm
16131 - 139242 90 19 -23.9 YP_214096 5' arm      3' arm
16177 - 176367 89 22 -29.41 YP_214122 5' arm      3' arm
16182 - 183339 87 21.5 -22.5 YP_214126 5' arm      3' arm
16230 - 223747 90 22 -26.9 YP_214165 5' arm      3' arm
16229 - 223121 89 19.5 -25.2 YP_214164 5' arm      3' arm
16225 - 214276 85 20.5 -24.8 5' arm      3' arm
16217 - 207469 90 22.5 -22.8 YP_214149 5' arm      3' arm
16216 - 207070 90 21 -21.7 YP_214148 5' arm      3' arm
16212 - 201912 82 24 -21 YP_214143 5' arm      3' arm
16207 - 198913 85 20.5 -27 YP_214141 5' arm      3' arm
16204 - 198447 89 20 -23.5 YP_214141 5' arm      3' arm
16200 - 195730 87 20 -23.8 YP_214139 5' arm      3' arm
16190 - 190137 89 21.5 -21.4 YP_214135 5' arm      3' arm
16192 - 191592 90 20 -19.4 YP_214137 5' arm      3' arm
16193 - 191754 90 19.5 -24 YP_214137 5' arm      3' arm
16187 - 186985 90 19.5 -22.9 YP_214129 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.