miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
47835019 NC_004333.2 Burkholderia cepacia phage Bcep781

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17163 - 23323 87 19 -20.8 NP_705657 5' arm      3' arm
17158 - 21006 86 20.5 -25.3 NP_705653 5' arm      3' arm
17167 - 24259 87 22 -24.7 NP_705658 5' arm      3' arm
17197 - 38679 88 22 -26.3 NP_705675 5' arm      3' arm
17155 - 18536 90 19 -25.4 NP_705647 5' arm      3' arm
17192 - 37548 85 19.5 -27 NP_705675 5' arm      3' arm
17187 - 32829 90 22 -28.8 NP_705671 5' arm      3' arm
17185 - 31769 90 20.5 -21.4 NP_705669 5' arm      3' arm
17183 - 30691 85 20 -24.6 NP_705668 5' arm      3' arm
17170 - 25630 87 20 -24 NP_705659 5' arm      3' arm
17109 - 1968 87 19 -28.6 NP_705631 5' arm      3' arm
17180 - 29206 88 19 -23.2 NP_705666 5' arm      3' arm
17169 - 25038 90 23 -28.6 NP_705659 5' arm      3' arm
17108 - 1609 90 20.5 -21.7 NP_705630 5' arm      3' arm
17057 + 25736 85 22.5 -24.3 NP_705659 5' arm      3' arm
17053 + 23741 90 23 -22.6 NP_705657 5' arm      3' arm
17059 + 27369 89 27.5 -25.2 NP_705664 5' arm      3' arm
17050 + 23122 90 24.5 -19.9 NP_705657 5' arm      3' arm
17020 + 9949 89 24 -23.9 NP_705640 5' arm      3' arm
17025 + 11476 88 24.5 -22.5 NP_705642 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.