miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26498 + 19264 85 22.5 -23.4 NP_958686 5' arm      3' arm
26496 + 18535 88 22 -21.8 NP_958685 5' arm      3' arm
26505 + 21064 88 22 -20.4 NP_958690 5' arm      3' arm
26482 + 14923 89 22 -20.2 NP_958681 5' arm      3' arm
26495 + 18408 90 22.5 -23.1 NP_958685 5' arm      3' arm
26488 + 16374 90 22.5 -22.4 NP_958682 5' arm      3' arm
26493 + 17573 89 22.5 -33.8 NP_958683 5' arm      3' arm
26537 + 40716 90 19.5 -29.5 NP_958716 5' arm      3' arm
26536 + 40367 90 19.5 -23.2 NP_958716 5' arm      3' arm
26533 + 38736 90 19.5 -25.7 NP_958712 5' arm      3' arm
26532 + 37598 89 20.5 -25.4 NP_958711 5' arm      3' arm
26531 + 36514 88 22 -28.4 NP_958711 5' arm      3' arm
26535 + 40078 90 23 -21.7 NP_958716 5' arm      3' arm
26530 + 34979 89 19.5 -23.5 NP_958707 5' arm      3' arm
26529 + 34169 87 19.5 -20.5 NP_958707 5' arm      3' arm
26528 + 33607 90 19.5 -25.4 NP_958705 5' arm      3' arm
26527 + 33062 87 21.5 -26.6 NP_958705 5' arm      3' arm
26526 + 31562 89 19.5 -22.3 NP_958702 5' arm      3' arm
26520 + 27694 88 19.5 -26 NP_958698 5' arm      3' arm
26525 + 31275 84 20 -25.1 NP_958701 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.