miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38638196 NC_005264.1 Psittacid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
24613 - 64918 87 20.5 -25.7 NP_944409 5' arm      3' arm
24614 - 65165 89 23 -23.7 NP_944409 5' arm      3' arm
24661 - 98547 87 19.5 -23.5 NP_944427 5' arm      3' arm
24659 - 97747 86 23 -20 NP_944427 5' arm      3' arm
24673 - 106278 83 19 -23.6 NP_944432 5' arm      3' arm
24670 - 105651 90 21 -20.1 5' arm      3' arm
24675 - 108307 89 25 -23.4 NP_944433 5' arm      3' arm
24678 - 110453 90 20.5 -24.3 NP_944434 5' arm      3' arm
24681 - 113654 85 20.5 -27.9 5' arm      3' arm
24680 - 113550 89 22 -26 NP_944435 5' arm      3' arm
24652 - 93299 90 22 -22.8 NP_944423 5' arm      3' arm
24651 - 92784 90 19.5 -20.6 NP_944423 5' arm      3' arm
24621 - 72218 87 21.5 -24.9 NP_944412 5' arm      3' arm
24623 - 75325 90 20.5 -22.8 NP_944414 5' arm      3' arm
24630 - 80918 85 20.5 -23.6 NP_944417 5' arm      3' arm
24629 - 79808 90 24 -23.8 5' arm      3' arm
24632 - 82733 88 22.5 -29.9 NP_944418 5' arm      3' arm
24643 - 88330 87 20 -22.2 NP_944420 5' arm      3' arm
24639 - 87280 90 21.5 -23.1 NP_944420 5' arm      3' arm
24646 - 88868 86 22.5 -21.6 NP_944420 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.