miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23680 + 115885 90 22 -24.4 5' arm      3' arm
23682 + 117175 89 20 -20.8 NP_954955 5' arm      3' arm
23681 + 117033 89 19 -21.2 NP_954955 5' arm      3' arm
23684 + 118523 90 24 -23.3 NP_954957 5' arm      3' arm
23672 + 104044 88 21 -24.1 NP_954951 5' arm      3' arm
23676 + 113215 86 22.5 -22.1 5' arm      3' arm
23587 + 29616 89 21 -25.5 NP_954910 5' arm      3' arm
23586 + 28586 90 21 -24.8 NP_954909 5' arm      3' arm
23588 + 31032 90 23 -27.1 NP_954910 5' arm      3' arm
23609 + 52565 85 19.5 -21.7 NP_954918 5' arm      3' arm
23616 + 57804 90 23.5 -26.7 NP_954920 5' arm      3' arm
23665 + 100258 89 19.5 -25.9 NP_954947 5' arm      3' arm
23619 + 58710 90 21.5 -23.4 NP_954920 5' arm      3' arm
23615 + 56671 88 21 -23.4 NP_954920 5' arm      3' arm
23614 + 56025 90 20.5 -26.6 NP_954919 5' arm      3' arm
23617 + 57966 90 20.5 -21.4 NP_954920 5' arm      3' arm
23618 + 58089 89 20.5 -23.6 NP_954920 5' arm      3' arm
23613 + 55421 90 22.5 -28.5 NP_954919 5' arm      3' arm
23667 + 102128 86 19.5 -29.4 NP_954950 5' arm      3' arm
23670 + 103420 88 19.5 -24.8 NP_954952 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.