miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29294538 NC_004650.1 Sweet potato leaf curl virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17790 + 556 90 27.5 -24 NP_808841 5' arm      3' arm
17791 + 2669 87 23.5 -28 5' arm      3' arm
17792 - 444 89 22.5 -27.3 NP_808840 5' arm      3' arm
17793 - 2127 86 22 -23.3 NP_808844 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.