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GenBank Identifier | RefSeq Acc. | Name |
20451024 | NC_003787.1 | Apple latent spherical virus segment 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15173 | + | 4152 | 90 | 20.5 | -27.1 | NP_620568 | 5' arm 3' arm | ||
15174 | + | 5952 | 89 | 19 | -22.3 | NP_620568 | 5' arm 3' arm | ||
15175 | - | 497 | 90 | 19.5 | -28.1 | NP_620568 | 5' arm 3' arm | ||
15176 | - | 646 | 90 | 19.5 | -22.9 | NP_620568 | 5' arm 3' arm | ||
15177 | - | 6038 | 85 | 20 | -21.1 | NP_620568 | 5' arm 3' arm | ||
15178 | + | 464 | 89 | 19.5 | -25.2 | NP_620569 | 5' arm 3' arm | ||
15179 | + | 3107 | 90 | 21.5 | -25.8 | NP_620569 | 5' arm 3' arm | ||
15180 | - | 596 | 81 | 19 | -26.9 | NP_620569 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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