miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057066 NC_005336.1 Orf virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25131 + 57740 90 19 -22.7 NP_957833 5' arm      3' arm
25228 + 104284 89 19 -26.1 NP_957878 5' arm      3' arm
25403 - 75615 87 19 -19.4 NP_957849 5' arm      3' arm
25268 + 137776 89 19 -27.4 5' arm      3' arm
25171 + 80220 90 19 -20 NP_957853 5' arm      3' arm
25088 + 31166 89 19 -26.3 NP_957806 5' arm      3' arm
25072 + 23461 78 19 -23.6 NP_957800 5' arm      3' arm
25063 + 20552 90 19 -21.1 NP_957798 5' arm      3' arm
25058 + 19070 88 19 -27.7 NP_957796 5' arm      3' arm
25375 - 58501 81 19 -29.1 NP_957834 5' arm      3' arm
25261 + 130959 86 19 -28.1 NP_957906 5' arm      3' arm
25358 - 51979 89 19 -25.9 NP_957829 5' arm      3' arm
25386 - 65816 88 19 -22.4 NP_957841 5' arm      3' arm
25205 + 92371 87 19 -23.7 5' arm      3' arm
25390 - 68887 90 19 -34.1 NP_957844 5' arm      3' arm
25074 + 25108 89 19 -29.8 NP_957802 5' arm      3' arm
25040 + 9222 89 19 -29.9 NP_957787 5' arm      3' arm
25037 + 8042 86 19 -29.3 NP_957786 5' arm      3' arm
25359 - 52699 89 19 -19.5 NP_957830 5' arm      3' arm
25201 + 91147 88 19 -25.1 NP_957863 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.