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GenBank Identifier | RefSeq Acc. | Name |
9633809 | NC_001266.1 | Rabbit fibroma virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
1215 | + | 6537 | 87 | 20 | -20.8 | NP_051893 | 5' arm 3' arm | ||
1216 | + | 52084 | 90 | 20 | -20.6 | NP_051942 | 5' arm 3' arm | ||
1217 | + | 52507 | 83 | 19.5 | -23.5 | NP_051943 | 5' arm 3' arm | ||
1218 | + | 74472 | 89 | 24 | -30.9 | NP_051966 | 5' arm 3' arm | ||
1219 | + | 126298 | 90 | 20.5 | -21.2 | NP_052023 | 5' arm 3' arm | ||
1220 | + | 138429 | 90 | 24 | -20.5 | 5' arm 3' arm | |||
1221 | + | 157036 | 87 | 20.5 | -27 | NP_052048 | 5' arm 3' arm | ||
1222 | - | 2822 | 87 | 20.5 | -27 | NP_051888 | 5' arm 3' arm | ||
1223 | - | 116137 | 87 | 22.5 | -20.7 | 5' arm 3' arm | |||
1224 | - | 153321 | 87 | 20 | -20.8 | NP_052043 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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