miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5794 - 7506 89 23 -19.72 5' arm      3' arm
5640 + 63544 90 24.5 -19.8 NP_044632 5' arm      3' arm
5962 - 119674 83 20 -19.9 5' arm      3' arm
5942 - 104325 90 22.5 -19.9 NP_044650 5' arm      3' arm
5541 + 6697 83 20 -19.9 5' arm      3' arm
5717 + 112497 89 22.5 -20 NP_044656 5' arm      3' arm
5621 + 47885 80 20 -20 NP_044625 5' arm      3' arm
5749 + 136678 90 21.5 -20.1 5' arm      3' arm
5977 - 131252 89 21 -20.2 5' arm      3' arm
5774 + 146981 89 21 -20.2 5' arm      3' arm
5992 - 138258 89 23 -20.2 5' arm      3' arm
5828 - 33819 65 20 -20.2 NP_044616 5' arm      3' arm
5867 - 57131 90 22.5 -20.2 NP_044630 5' arm      3' arm
5719 + 114177 90 21.5 -20.2 NP_044657 5' arm      3' arm
5701 + 97478 89 24 -20.3 NP_044646 5' arm      3' arm
5957 - 115806 90 19 -20.3 NP_044658 5' arm      3' arm
5849 - 46581 83 20 -20.3 5' arm      3' arm
5605 + 39611 88 21 -20.3 NP_044620 5' arm      3' arm
5647 + 68102 89 19 -20.3 NP_044634 5' arm      3' arm
5830 - 35370 90 19.5 -20.3 NP_044619 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.