miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5982 - 132843 89 22 -31.2 NP_044663 5' arm      3' arm
5984 - 135086 88 19.5 -20.6 5' arm      3' arm
5995 - 141467 90 19 -26.6 NP_044670 5' arm      3' arm
6000 - 146276 88 21 -30.6 5' arm      3' arm
5969 - 123493 88 25.5 -27.3 5' arm      3' arm
5976 - 130931 88 20.5 -29 NP_044676 5' arm      3' arm
5988 - 136996 87 20 -22.3 NP_044666 5' arm      3' arm
6001 - 147413 90 20 -26.3 NP_044662 5' arm      3' arm
5974 - 130067 89 21 -36.8 NP_044662 5' arm      3' arm
6002 - 148266 87 21.5 -26 NP_044676 5' arm      3' arm
5986 - 135825 86 19.5 -21.6 NP_044665 5' arm      3' arm
5979 - 131824 88 22 -30.2 5' arm      3' arm
5985 - 135666 86 21 -20.4 NP_044665 5' arm      3' arm
5992 - 138258 89 23 -20.2 5' arm      3' arm
5994 - 140211 89 21 -24.7 NP_044669 5' arm      3' arm
5999 - 145607 88 20.5 -20.7 NP_044675 5' arm      3' arm
5963 - 120412 89 20 -23.7 5' arm      3' arm
5966 - 121338 90 21 -26.5 NP_044660 5' arm      3' arm
5972 - 126801 88 23 -25.7 5' arm      3' arm
5981 - 132380 87 20 -27.6 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.