miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5963 - 120412 89 20 -23.7 5' arm      3' arm
5962 - 119674 83 20 -19.9 5' arm      3' arm
5961 - 118881 90 19.5 -19.4 5' arm      3' arm
5960 - 118404 90 29 -31.1 5' arm      3' arm
5959 - 117150 89 19.5 -25.9 5' arm      3' arm
5958 - 116003 88 19.5 -19.6 NP_044658 5' arm      3' arm
5957 - 115806 90 19 -20.3 NP_044658 5' arm      3' arm
5956 - 115657 87 22 -25.9 NP_044658 5' arm      3' arm
5955 - 115509 75 20.5 -30.6 5' arm      3' arm
5954 - 114880 90 19.5 -22.6 NP_044657 5' arm      3' arm
5953 - 114773 90 20.5 -23.52 NP_044657 5' arm      3' arm
5952 - 113638 82 20 -26.5 5' arm      3' arm
5951 - 113457 89 23 -29.5 5' arm      3' arm
5950 - 112457 86 20 -23.5 NP_044656 5' arm      3' arm
5949 - 111955 86 19.5 -21.7 NP_044655 5' arm      3' arm
5948 - 109487 89 23.5 -24.3 NP_044655 5' arm      3' arm
5947 - 108670 90 21.5 -24.1 NP_044654 5' arm      3' arm
5946 - 107721 90 19.5 -27.5 NP_044653 5' arm      3' arm
5945 - 106965 87 22 -27 NP_044652 5' arm      3' arm
5944 - 106254 78 21 -28.1 NP_044651 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.