miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5955 - 115509 75 20.5 -30.6 5' arm      3' arm
5555 + 16257 90 20 -30.6 NP_044607 5' arm      3' arm
5964 - 120512 87 20 -30.5 5' arm      3' arm
5539 + 5859 87 20 -30.5 5' arm      3' arm
5581 + 29079 87 20 -30.5 NP_044616 5' arm      3' arm
5666 + 80012 90 19.5 -30.4 NP_044638 5' arm      3' arm
5841 - 43250 86 22 -30.3 NP_044622 5' arm      3' arm
5538 + 5194 90 19 -30.3 NP_044660 5' arm      3' arm
5965 - 121177 90 19 -30.3 NP_044601 5' arm      3' arm
5979 - 131824 88 22 -30.2 5' arm      3' arm
5835 - 38802 88 20 -30.2 NP_044620 5' arm      3' arm
5556 + 17282 88 21.5 -30.2 NP_044608 5' arm      3' arm
5772 + 146409 88 22 -30.2 5' arm      3' arm
5893 - 73706 89 21 -30.1 NP_044638 5' arm      3' arm
5579 + 28248 77 19.5 -30.1 NP_044615 5' arm      3' arm
5630 + 54719 89 24.5 -29.9 NP_044629 5' arm      3' arm
5935 - 99815 87 20 -29.9 NP_044648 5' arm      3' arm
5695 + 94515 85 19 -29.8 NP_044644 5' arm      3' arm
5599 + 36784 85 20 -29.7 NP_044620 5' arm      3' arm
5736 + 123794 89 23 -29.7 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.