miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5606 + 39840 89 19 -33.2 NP_044620 5' arm      3' arm
5766 + 144685 86 19 -23.3 NP_044673 5' arm      3' arm
5926 - 91315 85 19 -22.9 NP_044643 5' arm      3' arm
5557 + 17409 88 19 -21.8 NP_044608 5' arm      3' arm
5708 + 103389 89 19 -25.9 5' arm      3' arm
5617 + 46900 90 19 -26.6 NP_044624 5' arm      3' arm
5957 - 115806 90 19 -20.3 NP_044658 5' arm      3' arm
5773 + 146886 90 19 -22.4 5' arm      3' arm
5549 + 11117 72 19 -31.7 NP_044604 5' arm      3' arm
5874 - 61979 90 19 -22.4 NP_044631 5' arm      3' arm
5825 - 31992 85 19 -27.4 NP_044618 5' arm      3' arm
5885 - 66696 88 19 -21.8 NP_044633 5' arm      3' arm
5623 + 49165 88 19 -27.9 NP_044626 5' arm      3' arm
5636 + 60020 90 19.5 -22.2 NP_044631 5' arm      3' arm
5561 + 19553 90 19.5 -24.1 NP_044609 5' arm      3' arm
5743 + 132561 90 19.5 -24.7 5' arm      3' arm
5752 + 138654 81 19.5 -24.7 NP_044668 5' arm      3' arm
5753 + 139671 90 19.5 -24.2 5' arm      3' arm
5607 + 40460 89 19.5 -32.4 NP_044620 5' arm      3' arm
5588 + 32435 90 19.5 -26.2 NP_044618 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.