miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5537 + 5033 90 21 -26.5 NP_044601 5' arm      3' arm
5543 + 7967 90 29 -31.1 5' arm      3' arm
5535 + 3460 87 19 -26.7 NP_044660 5' arm      3' arm
5536 + 3815 90 20 -26 5' arm      3' arm
5533 + 414 88 20 -28.72 5' arm      3' arm
5548 + 10980 85 22 -29.2 NP_044604 5' arm      3' arm
5551 + 12283 88 22 -24.7 NP_044605 5' arm      3' arm
5563 + 20228 88 21 -31.4 NP_044609 5' arm      3' arm
5562 + 19684 79 21 -20.5 NP_044609 5' arm      3' arm
5557 + 17409 88 19 -21.8 NP_044608 5' arm      3' arm
5555 + 16257 90 20 -30.6 NP_044607 5' arm      3' arm
5556 + 17282 88 21.5 -30.2 NP_044608 5' arm      3' arm
5558 + 17912 73 22.5 -26.14 NP_044608 5' arm      3' arm
5559 + 18070 90 23 -26.5 5' arm      3' arm
5549 + 11117 72 19 -31.7 NP_044604 5' arm      3' arm
5550 + 12015 90 19.5 -28.1 NP_044605 5' arm      3' arm
5553 + 13641 86 21 -22.3 NP_044606 5' arm      3' arm
5546 + 10580 89 21 -25.4 NP_044603 5' arm      3' arm
5547 + 10676 89 21.5 -31.3 NP_044603 5' arm      3' arm
5552 + 12686 85 22 -28.9 NP_044606 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.